Publications
Journal Articles
Serag A, Ion-Margineanu A, Qureshi H, McMillan R, Saint Martin MJ, Diamond J, O'Reilly P, Hamilton P. Translational AI and Deep Learning in Diagnostic Pathology. Front Med (Lausanne). 2019;6:185. https://doi.org/10.3389/fmed.2019.0018
Blesa M, Sullivan G, Anblagan D, Telford EJ, Quigley AJ, Sparrow SA, Serag A, Semple SI, Bastin ME, Boardman JP. Early breast milk exposure modifies brain connectivity in preterm infants. Neuroimage. 2019 Jan 1;184:431-439. https://doi.org/10.1016/j.neuroimage.2018.09.045
Andescavage NN, du Plessis A, McCarter R, Serag A, Evangelou I, Vezina G, Robertson R, Limperopoulos C. Complex trajectories of brain development in the healthy human fetus. Cereb Cortex. 2017 Nov 1;27(11):5274-83. https://doi.org/10.1093/cercor/bhw306
Denison FC, Macnaught G, Semple SIK, Terris G, Walker J, Anblagan D, Serag A, Reynolds RM, Boardman JP. Brain development in fetuses of mothers with diabetes: A case-control MR Imaging Study. AJNR Am J Neuroradiol. 2017 May;38(5):1037-44. https://doi.org/10.3174/ajnr.A5118
Serag A, Wilkinson AG, Telford EJ, Pataky R, Sparrow SA, Anblagan D, Macnaught G, Semple SI, Boardman JP. SEGMA: An Automatic SEGMentation Approach for Human Brain MRI using Sliding Window and Random Forests. Front Neuroinform. 2017;11:2. https://doi.org/10.3389/fninf.2017.00002
Serag A, Macnaught G, Denison FC, Reynolds RM, Semple SI, Boardman JP. Histograms of Oriented 3D Gradients for Fully Automated Fetal Brain Localization and Robust Motion Correction in 3 T Magnetic Resonance Images. Biomed Res Int. 2017;2017:3956363. https://doi.org/10.1155/2017/3956363
Anblagan D, Pataky R, Evans MJ, Telford EJ, Serag A, Sparrow S, Piyasena C, Semple SI, Wilkinson AG, Bastin ME, Boardman JP. Association between preterm brain injury and exposure to chorioamnionitis during fetal life. Sci Rep. 2016 Dec 1;6:37932. https://doi.org/10.1038/srep37932
Blesa M, Serag A, Wilkinson AG, Anblagan D, Telford EJ, Pataky R, Sparrow SA, Macnaught G, Semple SI, Bastin ME, Boardman JP. Parcellation of the healthy neonatal brain into 107 regions using Atlas Propagation through Intermediate Time Points in childhood. Front Neurosci. 2016 Jun;10:220. https://doi.org/10.3389/fnins.2016.00220
Serag A, Blesa M, Moore EJ, Pataky R, Sparrow SA, Wilkinson AG, Macnaught G, Semple SI, Boardman JP. Accurate Learning with Few Atlases (ALFA): An algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods. Sci Rep. 2016 Mar 24;6:23470. https://doi.org/10.1038/srep23470
Anblagan D, Bastin ME, Sparrow S, Piyasena C, Pataky R, Moore EJ, Serag A, Wilkinson AG, Clayden JD, Semple SI, Boardman JP. Tract shape modeling detects changes associated with preterm birth and neuroprotective treatment effects. Neuroimage Clin. 2015 Jun;8:51-8. https://doi.org/10.1016/j.nicl.2015.03.021
Makropoulos A, Gousias IS, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D. Automatic whole brain MRI segmentation of the developing neonatal brain. IEEE Trans Med Imaging. 2014 Sep;33(9):1818-31. https://doi.org/10.1109/tmi.2014.2322280
Boardman JP, Walley A, Ball G, Takousis P, Krishnan ML, Hughes-Carre L, Aljabar P, Serag A, King C, Merchant N, Srinivasan L, Froguel P, Hajnal J, Rueckert D, Counsell S, Edwards AD. Common genetic variants and risk of brain injury after preterm birth. Pediatrics. 2014 Jun;133(6):e1655-63. https://doi.org/10.1542/peds.2013-3011
Kaba D, Wang C, Li Y, Salazar-Gonzalez A, Liu X, Serag A. Retinal blood vessels extraction using probabilistic modelling. Health Inf Sci Syst. 2014 Jan;2:2. https://doi.org/10.1186/2047-2501-2-2
Serag A, Kyriakopoulou V, Rutherford MA, Edwards AD, Hajnal JV, Aljabar P, Counsell SJ, Boardman JP, Rueckert D. A multi-channel 4D Probabilistic Atlas of the developing brain: Application to fetuses and neonates. Annals of BMVA. 2012;2012(3):1-14. http://www.bmva.org/annals/2012/2012-0003.pdf
Serag A, Aljabar P, Ball G, Counsell SJ, Boardman JP, Rutherford MA, Edwards AD, Hajnal JV, Rueckert D. Construction of a consistent high-definition spatio-temporal atlas of the developing brain using adaptive kernel regression. Neuroimage. 2012 Feb 1;59(3):2255-65. https://doi.org/10.1016/j.neuroimage.2011.09.062
Kuklisova-Murgasova M, Aljabar P, Srinivasan L, Counsell SJ, Doria V, Serag A, Gousias IS, Boardman JP, Rutherford MA, Edwards AD, Hajnal JV, Rueckert D. A dynamic 4D probabilistic atlas of the developing brain. Neuroimage. 2011 Feb 14;54(4):2750-63. https://doi.org/10.1016/j.neuroimage.2010.10.019
Blesa M, Sullivan G, Anblagan D, Telford EJ, Quigley AJ, Sparrow SA, Serag A, Semple SI, Bastin ME, Boardman JP. Early breast milk exposure modifies brain connectivity in preterm infants. Neuroimage. 2019 Jan 1;184:431-439. https://doi.org/10.1016/j.neuroimage.2018.09.045
Andescavage NN, du Plessis A, McCarter R, Serag A, Evangelou I, Vezina G, Robertson R, Limperopoulos C. Complex trajectories of brain development in the healthy human fetus. Cereb Cortex. 2017 Nov 1;27(11):5274-83. https://doi.org/10.1093/cercor/bhw306
Denison FC, Macnaught G, Semple SIK, Terris G, Walker J, Anblagan D, Serag A, Reynolds RM, Boardman JP. Brain development in fetuses of mothers with diabetes: A case-control MR Imaging Study. AJNR Am J Neuroradiol. 2017 May;38(5):1037-44. https://doi.org/10.3174/ajnr.A5118
Serag A, Wilkinson AG, Telford EJ, Pataky R, Sparrow SA, Anblagan D, Macnaught G, Semple SI, Boardman JP. SEGMA: An Automatic SEGMentation Approach for Human Brain MRI using Sliding Window and Random Forests. Front Neuroinform. 2017;11:2. https://doi.org/10.3389/fninf.2017.00002
Serag A, Macnaught G, Denison FC, Reynolds RM, Semple SI, Boardman JP. Histograms of Oriented 3D Gradients for Fully Automated Fetal Brain Localization and Robust Motion Correction in 3 T Magnetic Resonance Images. Biomed Res Int. 2017;2017:3956363. https://doi.org/10.1155/2017/3956363
Anblagan D, Pataky R, Evans MJ, Telford EJ, Serag A, Sparrow S, Piyasena C, Semple SI, Wilkinson AG, Bastin ME, Boardman JP. Association between preterm brain injury and exposure to chorioamnionitis during fetal life. Sci Rep. 2016 Dec 1;6:37932. https://doi.org/10.1038/srep37932
Blesa M, Serag A, Wilkinson AG, Anblagan D, Telford EJ, Pataky R, Sparrow SA, Macnaught G, Semple SI, Bastin ME, Boardman JP. Parcellation of the healthy neonatal brain into 107 regions using Atlas Propagation through Intermediate Time Points in childhood. Front Neurosci. 2016 Jun;10:220. https://doi.org/10.3389/fnins.2016.00220
Serag A, Blesa M, Moore EJ, Pataky R, Sparrow SA, Wilkinson AG, Macnaught G, Semple SI, Boardman JP. Accurate Learning with Few Atlases (ALFA): An algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods. Sci Rep. 2016 Mar 24;6:23470. https://doi.org/10.1038/srep23470
Anblagan D, Bastin ME, Sparrow S, Piyasena C, Pataky R, Moore EJ, Serag A, Wilkinson AG, Clayden JD, Semple SI, Boardman JP. Tract shape modeling detects changes associated with preterm birth and neuroprotective treatment effects. Neuroimage Clin. 2015 Jun;8:51-8. https://doi.org/10.1016/j.nicl.2015.03.021
Makropoulos A, Gousias IS, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D. Automatic whole brain MRI segmentation of the developing neonatal brain. IEEE Trans Med Imaging. 2014 Sep;33(9):1818-31. https://doi.org/10.1109/tmi.2014.2322280
Boardman JP, Walley A, Ball G, Takousis P, Krishnan ML, Hughes-Carre L, Aljabar P, Serag A, King C, Merchant N, Srinivasan L, Froguel P, Hajnal J, Rueckert D, Counsell S, Edwards AD. Common genetic variants and risk of brain injury after preterm birth. Pediatrics. 2014 Jun;133(6):e1655-63. https://doi.org/10.1542/peds.2013-3011
Kaba D, Wang C, Li Y, Salazar-Gonzalez A, Liu X, Serag A. Retinal blood vessels extraction using probabilistic modelling. Health Inf Sci Syst. 2014 Jan;2:2. https://doi.org/10.1186/2047-2501-2-2
Serag A, Kyriakopoulou V, Rutherford MA, Edwards AD, Hajnal JV, Aljabar P, Counsell SJ, Boardman JP, Rueckert D. A multi-channel 4D Probabilistic Atlas of the developing brain: Application to fetuses and neonates. Annals of BMVA. 2012;2012(3):1-14. http://www.bmva.org/annals/2012/2012-0003.pdf
Serag A, Aljabar P, Ball G, Counsell SJ, Boardman JP, Rutherford MA, Edwards AD, Hajnal JV, Rueckert D. Construction of a consistent high-definition spatio-temporal atlas of the developing brain using adaptive kernel regression. Neuroimage. 2012 Feb 1;59(3):2255-65. https://doi.org/10.1016/j.neuroimage.2011.09.062
Kuklisova-Murgasova M, Aljabar P, Srinivasan L, Counsell SJ, Doria V, Serag A, Gousias IS, Boardman JP, Rutherford MA, Edwards AD, Hajnal JV, Rueckert D. A dynamic 4D probabilistic atlas of the developing brain. Neuroimage. 2011 Feb 14;54(4):2750-63. https://doi.org/10.1016/j.neuroimage.2010.10.019
Conference Proceedings
Serag A, Boardman JP, Wilkinson AG, Macnaught G, Semple SI. A sparsity-based atlas selection technique for multiple-atlas segmentation: Application to neonatal brain labeling. IEEE Proceedings. 2016 Jun. (24th Signal Processing and Communication Application Conference (SIU)):2265-8. https://doi.org/10.1109/SIU.2016.7496227
Serag A, Boardman JP, Reynolds RM, Denison FC, Macnaught G, Semple SI. Automatic fetal brain localization in 3T MR images using Histograms of Oriented 3D Gradients. IEEE Proceedings. 2016 Jun. (24th Signal Processing and Communication Application Conference (SIU)):2273-6. https://doi.org/10.1109/SIU.2016.7496229
You W, Serag A, Evangelou I, Andescavage N, Limperopoulos C. Robust motion correction and outlier rejection of in vivo functional MR images of the fetal brain and placenta during maternal hyperoxia. SPIE Medical Imaging. 2015 May;9417(Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging). https://doi.org/10.1117/12.2082451
Evangelou IE, Serag A, Bouyssi-Kobar M, Plessis AJ, Limperopoulos C. Optimized methodology for neonatal diffusion tensor imaging processing and study-specific template construction. Annu Int Conf IEEE Eng Med Biol Soc. 2014;2014:2372-5. https://doi.org/10.1109/embc.2014.6944098
Kaba D, Salazar-Gonzalez AG, Li Y, Liu X, Serag A. Segmentation of retinal blood vessels using Gaussian Mixture Models and Expectation Maximisation. Health Information Science. 2013;7798(Second International Conference, HIS 2013):105-12. https://doi.org/10.1007/978-3-642- 37899-7_9
Wright R, Vatansever D, Kyriakopoulou V, Ledig C, Wolz R, Serag A, Rueckert D, Rutherford M, Hajnal J, Aljabar P. Age dependent fetal MR segmentation using manual and automated approaches. International Workshop on Perinatal and Paediatric Imaging (PaPI 2012). 2012 Oct: 97- 104. https://www.yumpu.com/en/document/read/36349392/perinatalandpaediatric-imagingpapi2012- department-of-
Wright R, Vatansever D, Kyriakopoulou V, Ledig C, Wolz R, Serag A, Rueckert D, Rutherford M, Hajnal J, Aljabar P. Neonatal brain segmentation using second order neighborhood information. International Workshop on Perinatal and Paediatric Imaging (PaPI 2012). 2012 Oct:33-40. https://www.yumpu.com/en/document/read/36349392/perinatalandpaediatric-imagingpapi2012- department-of-
Serag A, Aljabar P, Counsell S, Boardman J, Hajnal JV, Rueckert D. LISA: Longitudinal image registration via spatio-temporal atlases. 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI). 2012 May:334-7. https://doi.org/10.1109/ISBI.2012.6235552
Serag A, Gousias IS, Makropoulos A, Aljabar P, Hajnal JV, Boardman JP, Counsell SJ, Rueckert D. Unsupervised learning of shape complexity: Application to brain development. International Workshop on Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data. 2012;7570(Second International Workshop, STIA 2012):88-99. https://doi.org/10.1007/978-3-642- 33555-6_8
Makropoulos A, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D. Automatic tissue and structural segmentation of neonatal brain MRI using Expectation-Maximization. MICCAI Grand Challenge on Neonatal Brain Segmentation. 2012:9-15
Serag A, Aljabar P, Counsell SJ, Boardman JP, Hajnal JV, Rueckert D. A Four-dimensional Atlas of Neonatal Brain MRI. Medical Image Understanding and Analysis - MIUA 2011. 2011 July; (Proceedings of 15th Medical Image Understanding and Analysis):201-6. http://www.bmva.org/miua/miua2011.pdf
Serag A, Aljabar P, Counsell S, Boardman J, Hajnal JV, Rueckert D. Construction of a 4D atlas of the developing brain using non-rigid registration. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 2011 Jun:1532-5. https://doi.org/10.1109/ISBI.2011.5872693
Serag A, Aljabar P, Counsell S, Boardman J, Hajnal JV, Rueckert D. Tracking developmental changes in subcortical structures of the preterm brain using multi-modal MRI. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 2011 Jun:349-52. https://doi.org/10.1109/ISBI.2011.5872421
Vialard F-X, Risser L, Rueckert D, Aljabar P, Serag A. Construction of Diffeomorphic Spatio- temporal Atlases using Kärcher means and LDDMM: Application to Early Cortical Development. MICCAI Workshop on Image Analysis of Human Brain Development (MICCAI-IAHBD) 2011:72- 9. https://hal.archives-ouvertes.fr/hal-00663394
Serag A, Aljabar P, Kyriakopoulou V, Ball G, Counsell S, Boardman J, Hajnal J, Rueckert D. 2011. A 4D Atlas of the Developing Brain in Fetal MRI. MICCAI Workshop on Image Analysis of Human Brain Development (MICCAI-IAHBD) 2011:56-63
Serag A, Aljabar P, Ball G, Counsell SJ, Boardman JP, Hajnal JV, Rueckert D. Developmental signal intensity changes in subcortical structures of the perinatal brain detected using Multi-modal MRI. MICCAI workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data - STIA. 2010. https://www.sci.utah.edu/~gerig/MICCAI2010-SpatioTemporal/SpatioTempprogram.htm
Serag A, Wenzel F, Thiele F, Buchert R, Young S. Optimal feature selection for automated classification of FDG-PET in patients with suspected dementia. SPIE Medical Imaging. 2009;7260(Medical Imaging 2009: Computer-Aided Diagnosis). https://doi.org/10.1117/12.811562
Serag A, Boardman JP, Reynolds RM, Denison FC, Macnaught G, Semple SI. Automatic fetal brain localization in 3T MR images using Histograms of Oriented 3D Gradients. IEEE Proceedings. 2016 Jun. (24th Signal Processing and Communication Application Conference (SIU)):2273-6. https://doi.org/10.1109/SIU.2016.7496229
You W, Serag A, Evangelou I, Andescavage N, Limperopoulos C. Robust motion correction and outlier rejection of in vivo functional MR images of the fetal brain and placenta during maternal hyperoxia. SPIE Medical Imaging. 2015 May;9417(Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging). https://doi.org/10.1117/12.2082451
Evangelou IE, Serag A, Bouyssi-Kobar M, Plessis AJ, Limperopoulos C. Optimized methodology for neonatal diffusion tensor imaging processing and study-specific template construction. Annu Int Conf IEEE Eng Med Biol Soc. 2014;2014:2372-5. https://doi.org/10.1109/embc.2014.6944098
Kaba D, Salazar-Gonzalez AG, Li Y, Liu X, Serag A. Segmentation of retinal blood vessels using Gaussian Mixture Models and Expectation Maximisation. Health Information Science. 2013;7798(Second International Conference, HIS 2013):105-12. https://doi.org/10.1007/978-3-642- 37899-7_9
Wright R, Vatansever D, Kyriakopoulou V, Ledig C, Wolz R, Serag A, Rueckert D, Rutherford M, Hajnal J, Aljabar P. Age dependent fetal MR segmentation using manual and automated approaches. International Workshop on Perinatal and Paediatric Imaging (PaPI 2012). 2012 Oct: 97- 104. https://www.yumpu.com/en/document/read/36349392/perinatalandpaediatric-imagingpapi2012- department-of-
Wright R, Vatansever D, Kyriakopoulou V, Ledig C, Wolz R, Serag A, Rueckert D, Rutherford M, Hajnal J, Aljabar P. Neonatal brain segmentation using second order neighborhood information. International Workshop on Perinatal and Paediatric Imaging (PaPI 2012). 2012 Oct:33-40. https://www.yumpu.com/en/document/read/36349392/perinatalandpaediatric-imagingpapi2012- department-of-
Serag A, Aljabar P, Counsell S, Boardman J, Hajnal JV, Rueckert D. LISA: Longitudinal image registration via spatio-temporal atlases. 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI). 2012 May:334-7. https://doi.org/10.1109/ISBI.2012.6235552
Serag A, Gousias IS, Makropoulos A, Aljabar P, Hajnal JV, Boardman JP, Counsell SJ, Rueckert D. Unsupervised learning of shape complexity: Application to brain development. International Workshop on Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data. 2012;7570(Second International Workshop, STIA 2012):88-99. https://doi.org/10.1007/978-3-642- 33555-6_8
Makropoulos A, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D. Automatic tissue and structural segmentation of neonatal brain MRI using Expectation-Maximization. MICCAI Grand Challenge on Neonatal Brain Segmentation. 2012:9-15
Serag A, Aljabar P, Counsell SJ, Boardman JP, Hajnal JV, Rueckert D. A Four-dimensional Atlas of Neonatal Brain MRI. Medical Image Understanding and Analysis - MIUA 2011. 2011 July; (Proceedings of 15th Medical Image Understanding and Analysis):201-6. http://www.bmva.org/miua/miua2011.pdf
Serag A, Aljabar P, Counsell S, Boardman J, Hajnal JV, Rueckert D. Construction of a 4D atlas of the developing brain using non-rigid registration. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 2011 Jun:1532-5. https://doi.org/10.1109/ISBI.2011.5872693
Serag A, Aljabar P, Counsell S, Boardman J, Hajnal JV, Rueckert D. Tracking developmental changes in subcortical structures of the preterm brain using multi-modal MRI. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 2011 Jun:349-52. https://doi.org/10.1109/ISBI.2011.5872421
Vialard F-X, Risser L, Rueckert D, Aljabar P, Serag A. Construction of Diffeomorphic Spatio- temporal Atlases using Kärcher means and LDDMM: Application to Early Cortical Development. MICCAI Workshop on Image Analysis of Human Brain Development (MICCAI-IAHBD) 2011:72- 9. https://hal.archives-ouvertes.fr/hal-00663394
Serag A, Aljabar P, Kyriakopoulou V, Ball G, Counsell S, Boardman J, Hajnal J, Rueckert D. 2011. A 4D Atlas of the Developing Brain in Fetal MRI. MICCAI Workshop on Image Analysis of Human Brain Development (MICCAI-IAHBD) 2011:56-63
Serag A, Aljabar P, Ball G, Counsell SJ, Boardman JP, Hajnal JV, Rueckert D. Developmental signal intensity changes in subcortical structures of the perinatal brain detected using Multi-modal MRI. MICCAI workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data - STIA. 2010. https://www.sci.utah.edu/~gerig/MICCAI2010-SpatioTemporal/SpatioTempprogram.htm
Serag A, Wenzel F, Thiele F, Buchert R, Young S. Optimal feature selection for automated classification of FDG-PET in patients with suspected dementia. SPIE Medical Imaging. 2009;7260(Medical Imaging 2009: Computer-Aided Diagnosis). https://doi.org/10.1117/12.811562
Abstracts
Margineanu,A, Serag A, Qureshi H, McMillan R, Saint Martin, M, Kennedy A, Diamond J, Salto- Tellez M, Maxwell P, O'Reilly P, Hamilton P. 2019 September. Nuclei segmentation of immunohistochemically stained slides using transfer learning from classical histopathological domain. In Virchows Archiv (Vol. 475, pp. S436-S436). 233 Spring St, New York, NY 10013 USA: Springer
Qureshi H, O'Reilly P, Maxwell J.P, Kennedy A, Serag A, Ionmargineanu A, Diamond J, Saint Martin M, McMillan R, Salto-Tellez M, Hamilton P. 2019 September. Automating tumour proportion score computation for lung cancer immunohistochemistry images. In Virchows Archiv (Vol. 475, pp. S144- S144). 233 Spring St, New York, NY 10013 USA: Springer.
Serag A, Saint Martin M, Qureshi H, Diamond J, O'Reilly P, Hamilton P. 2019 September. Unsupervised anomaly detection: application to colorectal liver metastasis. In Virchows Archiv (Vol. 475, Pp. S59-S59). 233 Spring St, New York, NY 10013 USA: Springer.
Serag A, Telford EJ, Semple SI, Boardman JP. 2017. Convolutional Neural Networks for Identifying Preterm Infants at High Risk of Developmental Disorders. The 25th Annual ISMRM Meeting.
Serag A, Telford EJ, Semple SI, Boardman JP. 2017. Automatic Segmentation of Human Brain MRI using Sliding Window and Random Forests. The 25th Annual ISMRM Meeting.
Blesa M, Serag A, Anblagan D, Telford EJ, Sparrow SA, Semple SI, Bastin M, Boardman JP. 2017. Anatomically constrained tractography and structural connectome of the neonatal brain. The 25th Annual ISMRM Meeting.
Blesa M, Serag A, Anblagan D, Telford EJ, Sparrow SA, Semple SI, Bastin M, Boardman JP. 2017. Fixel-based morphometry detects alterations in specific fibres in association with preterm birth: a proof-of-concept study. The 25th Annual ISMRM Meeting.
Serag A, Wilkinson AG, Telford EJ, Pataky R, Sparrow SA, Anblagan D, Macnaught G, Semple SI, Boardman JP. 2016. Automatic Segmentation of Human Brain MRI across the life course. Neonatal Society Spring Meeting.
Blesa M, Serag A, Wilkinson AG, Moore EJ, Pataky R, Sparrow SA, Macnaught G, Semple SI, Bastin M, Boardman JP. 2016. Parcellation of neonatal brain MRI into 107 regions using atlas propagation through intermediate time points in childhood. The 24th Annual ISMRM Meeting.
Blesa M, Serag A, Wilkinson AG, Moore EJ, Pataky R, Sparrow SA, Macnaught G, Semple SI, Bastin M, Boardman JP. 2015. Anatomical Labeling of the Neonatal Brain by Longitudinal Registration of an Adult Atlas Through Intermediate Time Points in Childhood. Neonatal Society Spring Meeting.
Andescavage N, Yarish A, Serag A. et al. 2014. Quantitative 3D MRI Assessment of Placental Volume in Healthy and Complex Pregnancies. Pediatric Academic Societies Annual Meeting.
Boardman JP, Walley A, Ball G, Takousis P, Krishnan ML, Hughes-Carre L, Aljabar P, Serag A, King C, Merchant N, Srinivasan L, Froguel P, Hajnal J, Rueckert D, Counsell SJ, Edwards AD. 2013. Common Variants in Genes associated with Schizophrenia and Lipid Metabolism Modulate Brain Injury after Preterm Birth. Neonatal Society Summer Meeting.
Makropoulos A, Gousias I, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell S, Rueckert D. 2012. Automatic multi-label segmentation of the preterm brain with the use of adaptive atlases. The 20th Annual ISMRM Meeting.
Makropoulos A, Gousias I, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell S, Rueckert D. 2012. Automatic multi-label segmentation of the preterm brain with the use of adaptive atlases. Pediatric Academic Societies Annual Meeting.
Serag A, Aljabar P, Ball G, Counsell SJ, Boardman JP, Rueckert D, Hajnal JV. 2011. Longitudinal analysis of tissue property changes in multi-modal MRI of the developing preterm brain. The 19th Annual ISMRM Meeting.
Serag A, Counsell SJ, Aljabar P, Ball G, Hajnal JV, Edwards AD, Rueckert D, Boardman JP. 2011. Construction of a 4D Atlas of the Developing Brain Using Magnetic Resonance Images. Pediatric Academic Societies Annual Meeting.
Serag A, Counsell SJ, Aljabar P, Ball G, Hajnal JV, Edwards AD, Rueckert D, Boardman JP. 2011. Spatio- Temporal Maps of T1 and T2 Weighted Signal Intensity Change in the Developing Brain. Pediatric Academic Societies Annual Meeting.
Serag A, Counsell SJ, Aljabar P, Ball G, Hajnal JV, Edwards AD, Rueckert D, Boardman JP. 2010. Spatio- temporal map of magnetic resonance T1 and T2 weighted signal intensity changes in the developing brain. Neonatal Society Autumn Meeting.
Qureshi H, O'Reilly P, Maxwell J.P, Kennedy A, Serag A, Ionmargineanu A, Diamond J, Saint Martin M, McMillan R, Salto-Tellez M, Hamilton P. 2019 September. Automating tumour proportion score computation for lung cancer immunohistochemistry images. In Virchows Archiv (Vol. 475, pp. S144- S144). 233 Spring St, New York, NY 10013 USA: Springer.
Serag A, Saint Martin M, Qureshi H, Diamond J, O'Reilly P, Hamilton P. 2019 September. Unsupervised anomaly detection: application to colorectal liver metastasis. In Virchows Archiv (Vol. 475, Pp. S59-S59). 233 Spring St, New York, NY 10013 USA: Springer.
Serag A, Telford EJ, Semple SI, Boardman JP. 2017. Convolutional Neural Networks for Identifying Preterm Infants at High Risk of Developmental Disorders. The 25th Annual ISMRM Meeting.
Serag A, Telford EJ, Semple SI, Boardman JP. 2017. Automatic Segmentation of Human Brain MRI using Sliding Window and Random Forests. The 25th Annual ISMRM Meeting.
Blesa M, Serag A, Anblagan D, Telford EJ, Sparrow SA, Semple SI, Bastin M, Boardman JP. 2017. Anatomically constrained tractography and structural connectome of the neonatal brain. The 25th Annual ISMRM Meeting.
Blesa M, Serag A, Anblagan D, Telford EJ, Sparrow SA, Semple SI, Bastin M, Boardman JP. 2017. Fixel-based morphometry detects alterations in specific fibres in association with preterm birth: a proof-of-concept study. The 25th Annual ISMRM Meeting.
Serag A, Wilkinson AG, Telford EJ, Pataky R, Sparrow SA, Anblagan D, Macnaught G, Semple SI, Boardman JP. 2016. Automatic Segmentation of Human Brain MRI across the life course. Neonatal Society Spring Meeting.
Blesa M, Serag A, Wilkinson AG, Moore EJ, Pataky R, Sparrow SA, Macnaught G, Semple SI, Bastin M, Boardman JP. 2016. Parcellation of neonatal brain MRI into 107 regions using atlas propagation through intermediate time points in childhood. The 24th Annual ISMRM Meeting.
Blesa M, Serag A, Wilkinson AG, Moore EJ, Pataky R, Sparrow SA, Macnaught G, Semple SI, Bastin M, Boardman JP. 2015. Anatomical Labeling of the Neonatal Brain by Longitudinal Registration of an Adult Atlas Through Intermediate Time Points in Childhood. Neonatal Society Spring Meeting.
Andescavage N, Yarish A, Serag A. et al. 2014. Quantitative 3D MRI Assessment of Placental Volume in Healthy and Complex Pregnancies. Pediatric Academic Societies Annual Meeting.
Boardman JP, Walley A, Ball G, Takousis P, Krishnan ML, Hughes-Carre L, Aljabar P, Serag A, King C, Merchant N, Srinivasan L, Froguel P, Hajnal J, Rueckert D, Counsell SJ, Edwards AD. 2013. Common Variants in Genes associated with Schizophrenia and Lipid Metabolism Modulate Brain Injury after Preterm Birth. Neonatal Society Summer Meeting.
Makropoulos A, Gousias I, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell S, Rueckert D. 2012. Automatic multi-label segmentation of the preterm brain with the use of adaptive atlases. The 20th Annual ISMRM Meeting.
Makropoulos A, Gousias I, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell S, Rueckert D. 2012. Automatic multi-label segmentation of the preterm brain with the use of adaptive atlases. Pediatric Academic Societies Annual Meeting.
Serag A, Aljabar P, Ball G, Counsell SJ, Boardman JP, Rueckert D, Hajnal JV. 2011. Longitudinal analysis of tissue property changes in multi-modal MRI of the developing preterm brain. The 19th Annual ISMRM Meeting.
Serag A, Counsell SJ, Aljabar P, Ball G, Hajnal JV, Edwards AD, Rueckert D, Boardman JP. 2011. Construction of a 4D Atlas of the Developing Brain Using Magnetic Resonance Images. Pediatric Academic Societies Annual Meeting.
Serag A, Counsell SJ, Aljabar P, Ball G, Hajnal JV, Edwards AD, Rueckert D, Boardman JP. 2011. Spatio- Temporal Maps of T1 and T2 Weighted Signal Intensity Change in the Developing Brain. Pediatric Academic Societies Annual Meeting.
Serag A, Counsell SJ, Aljabar P, Ball G, Hajnal JV, Edwards AD, Rueckert D, Boardman JP. 2010. Spatio- temporal map of magnetic resonance T1 and T2 weighted signal intensity changes in the developing brain. Neonatal Society Autumn Meeting.
